Blogs

ADVANCE Blog Notes: Interesting article by Mary Ann Mason at Slate.Com "In the Ivory Tower, Men Only"

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There is a really interesting article at Slate.Com from Mary Ann Mason, the author of "Do Babies Matter" which I have written about here before.  The post is titled "In the Ivory Tower, Men Only".  The post tells some of the background behind the book and discusses issues about graduate school, post doctoral positions, applying for faculty jobs and more.

Another round in Diamond vs. Simberloff: revisiting the checkerboard pattern debate

Feed: The EEB and flow

Edward F. Connor, Michael D. Collins, and Daniel Simberloff. 2013. "The Chequered History of Checkerboard Distributions." Ecology. http://dx.doi.org/10.1890/12-1471.1.One of the most vociferous recent debates in community ecology started in the 1970s between Jared Diamond and Dan Simberloff (and colleagues) regarding whether 'checkerboard patterns' of bird distributions provided evidence for interspecific competition.

ADVANCE Reading of the Day: Sylvia Earle, Women in Japan and the Gulf, Spaceflight

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Quick post here ...

How Open Are You? Part 1: Metrics to Measure Openness and Free Availability of Publications

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For many many years I have been raising a key questions in relation to open access publishing - how can we measure how open someone's publications are.  Ideally we would have a way of measuring this in some sort of index.  A few years ago I looked around and asked around and did not find anything out there of obvious direct relevance to what I wanted so I started mapping out ways to do this.

When Aaron Swartz died I started drafting some ideas on this topic.

Another week - another microbial art project

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The use of microbes in art projects continues to spread.  Here is another example: Bioluminescent art: Beautiful bacteria glow in the dark | MNN - Mother Nature Network.

ADVANCE Journal Club: Developing Graduate Students of Color for the Professoriate in STEM

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As I have posted about before - I am involved in the UC Davis ADVANCE project funded by NSF.  From the project website:

UC Davis ADVANCE is a newly funded Institutional Transformation grant that began in September of 2012. Our program is supported by the National Science Foundation’s ADVANCE Program which aims to increase the participation and advancement of women in academic science and engineering careers. 
My role in this project is as a member (and now Co-Chair) of one of the "Policies and Practices Review Initiative" Committee.

BioNames - colourful phylogenies and downloadable SVG

Feed: iPhylo

My latest tweak to BioNames is to add colour to the phylogenies. Terminal nodes with the same name are labelled with the same background colour. For example, here is a tree for fiddler and ghost crabs:ColourThe colours make it easier to see that this tree has a mixture of a few sequences from divergent taxa, and a lot of sequences from the same taxa.Note that you can now also download the SVG drawing of the tree.

Weird things coming up from automated Google Scholar searches pointing to hea1thandfitness.com

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I noticed some really weird stuff coming up in automated Google Scholar searches.

Yes, microbes are likely important everywhere, but evidence would be nice (re Atlantic piece on Soil)

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Just read this article in the Atlantic: Healthy Soil Bacteria, Healthy People - Mike Amaranthus & Bruce Allyn - The Atlantic.  It is interesting in a few ways.  But what got me a bit up in arms about it is the number of statements and claims that are not backed up by any reference to evidence.

The first five minutes are free - renting articles on DeepDyve

Feed: iPhylo

Deepdyve 4colorIn 2011 I wrote a short post about DeepDyve, a service where you could rent access to an article. DeepDyve has launched a "5-Minute Freemium" service where you can view an article online for 5 minutes, for free. You have to log in, either with DeepDyve or using Facebook, but no actual money changes hands.

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